PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe0058s0001.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 180aa    MW: 21063.2 Da    PI: 7.0181
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe0058s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.7e-11640842
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         r+ ++ +R+n + KKA ELS LC+++++ ii+ +
  Aqcoe0058s0001.1.p  6 VRKNSYRRRKNNLVKKADELSKLCAVKACAIIYNP 40
                        68889***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.031139IPR002100Transcription factor, MADS-box
SMARTSM004320.0011150IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-12359IPR002100Transcription factor, MADS-box
PfamPF003192.8E-10541IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRDHVVRKNS YRRRKNNLVK KADELSKLCA VKACAIIYNP YDPIPSVWPS NDEARRQFLT  60
LPDNMQTRKL FNLEYLKQQI VKLEGKLERA EKSKREEEIM DLIMRSATGE VLHGLKHEDV  120
LDMECYIEQR MKEIYETGCE QPNLGYYGRM VNDPIEANQF QPVLADMTMD HSHVQEARC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802391e-131JX680239.1 Aquilegia coerulea MADS-box protein AGL82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CRX71e-110A0A2G5CRX7_AQUCA; Uncharacterized protein
STRINGAquca_039_00138.11e-110(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-21AGAMOUS-like 80