PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe0919s0001.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 234aa MW: 26046.6 Da PI: 9.9428

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe0919s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.3e-07	29	68	2	44
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r+ h+ +Er RR+ +++ f L +llP+a + + + ++i Aqcoe0919s0001.1.p 29 RERHKLAERERRKTMRELFLSLHSLLPHA---NMVRKEQSSIQ 68 789*************************7...44444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-8	19	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.093	27	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-6	29	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.15E-4	29	75	No hit	No description
Pfam	PF00010	1.2E-4	29	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-6	218	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MTVEWNNDCE TVSSKEKSPG SSGAPINVRE RHKLAERERR KTMRELFLSL HSLLPHANMV 60 RKEQSSIQDQ IIKYLPLAAA QLGSLQKRKD SISLNRSNNN TTLSPKIQVS DKNSSDSLNS 120 SDCDIKVAPE PSLSVAIRVR GDRVNVSFID NKGTSQALLL SAILDELQAH NLELVSSTHC 180 RDGSKVVHHT ECKISDALER SPALLKKGLQ ELAYRLHKLR KSSTLKRTFD QLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246746.1	2e-98	PREDICTED: uncharacterized protein LOC104589957
TrEMBL	A0A2G5F9W5	1e-168	A0A2G5F9W5_AQUCA; Uncharacterized protein
STRING	Aquca_001_00280.1	1e-169	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe0919s0001.1.p