PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G003200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 101aa    MW: 11393.4 Da    PI: 10.0308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G003200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.7e-175082133
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                       C  C+tt+Tp+WR++p+g  +LCnaCGl+y++ 
  Aqcoe1G003200.1.p 50 CLACHTTSTPMWRKDPNGVGQLCNACGLKYKRV 82
                       778****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.8774480IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-114496IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-134486No hitNo description
Gene3DG3DSA:3.30.50.105.3E-164982IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-145082IPR000679Zinc finger, GATA-type
CDDcd002022.86E-105096No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MPMFGILGYG WYDPRCYCCE YSSYVNMAQV KAAGPVLMKP NFSTQQVKMC LACHTTSTPM  60
WRKDPNGVGQ LCNACGLKYK RVERRVFGTT KPNKKKPRTQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17996KRVERRVFGTTKPNKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-11GATA transcription factor 20