PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G003700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 298aa    MW: 31286.7 Da    PI: 10.1409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G003700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06102126226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        kt+ C+ f     Ck+Gd+C+F+Hg
  Aqcoe1G003700.1.p 102 KTRMCKKFNSAEGCKFGDKCHFSHG 126
                        89**********************8 PP
2zf-CCCH36.21e-11264288126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +fa+ G C +G+rC+FaHg
  Aqcoe1G003700.1.p 264 FKTKLCENFAK-GSCTFGERCHFAHG 288
                        69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-63762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-73861IPR000571Zinc finger, CCCH-type
PfamPF146081.64461No hitNo description
PROSITE profilePS5010313.657100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7100131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-11100130IPR000571Zinc finger, CCCH-type
SMARTSM003560.17100127IPR000571Zinc finger, CCCH-type
PfamPF146080.0094106126No hitNo description
SuperFamilySSF547915.41E-15165241IPR004088K Homology domain, type 1
SMARTSM003223.2E-12170240IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-15171239IPR004088K Homology domain, type 1
PROSITE profilePS5008414.529171235IPR004088K Homology domain, type 1
PfamPF000131.1E-11173237IPR004088K Homology domain, type 1
CDDcd001051.05E-13175235No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-15259294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8262293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586263290IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7263289IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDFGRARKRG RPEAGFNGNA GFKKNKQEMD SFPGIGSKSK PCTKFFSTAG CPFGEGCHFL  60
HYVPGGINTV AQMTNMGGNP ALPPRNAMAP PPFPDGSSQT AKTRMCKKFN SAEGCKFGDK  120
CHFSHGGREI GMPFAPSRED PRAMGPNMGR YAGRPEQPPP GLAAAASFGA SATAKISVDA  180
SLAGAIIGKG GVNSKQICRI TGAKLSIREN ESDPNLKNIE LEGTFDQIKQ ASAMVRELIV  240
NISSTAGPMS KPAAPAPATP ANNFKTKLCE NFAKGSCTFG ERCHFAHGTA ELRKQGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936049e-34FQ393604.1 Vitis vinifera clone SS0AFA25YC11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595043.11e-153zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G5EBM00.0A0A2G5EBM0_AQUCA; Uncharacterized protein
STRINGAquca_009_00034.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-56C3H family protein