PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G003700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 226aa    MW: 23532.8 Da    PI: 9.922
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G003700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49e-073054226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       kt+ C+ f     Ck+Gd+C+F+Hg
  Aqcoe1G003700.2.p 30 KTRMCKKFNSAEGCKFGDKCHFSHG 54
                       89**********************8 PP
2zf-CCCH36.76.9e-12192216126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +fa+ G C +G+rC+FaHg
  Aqcoe1G003700.2.p 192 FKTKLCENFAK-GSCTFGERCHFAHG 216
                        69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.172855IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-112858IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-72859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6572856IPR000571Zinc finger, CCCH-type
PfamPF146080.00663454No hitNo description
SuperFamilySSF547913.07E-1593169IPR004088K Homology domain, type 1
SMARTSM003223.2E-1298168IPR004087K Homology domain
PROSITE profilePS5008414.52999163IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.3E-1699167IPR004088K Homology domain, type 1
PfamPF000136.7E-12101165IPR004088K Homology domain, type 1
CDDcd001055.94E-14103163No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-15187222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8190221IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586191218IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTNMGGNPAL PPRNAMAPPP FPDGSSQTAK TRMCKKFNSA EGCKFGDKCH FSHGGREIGM  60
PFAPSREDPR AMGPNMGRYA GRPEQPPPGL AAAASFGASA TAKISVDASL AGAIIGKGGV  120
NSKQICRITG AKLSIRENES DPNLKNIELE GTFDQIKQAS AMVRELIVNI SSTAGPMSKP  180
AAPAPATPAN NFKTKLCENF AKGSCTFGER CHFAHGTAEL RKQGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595043.11e-109zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G5EBL51e-163A0A2G5EBL5_AQUCA; Uncharacterized protein
STRINGAquca_009_00034.11e-161(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-57C3H family protein