PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G007900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 319aa    MW: 33864.8 Da    PI: 6.7259
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G007900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30112165155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Aqcoe1G007900.1.p 112 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 165
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-20109169IPR009057Homeodomain-like
PROSITE profilePS5129411.059109168IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-30111170IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-24113165IPR006447Myb domain, plants
PfamPF002491.2E-7115164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MREEDSNWFS RWEEELPSPE ELMPITQTLI TPDLALAFDI GNPHNSNNNN NTTTNSPTPQ  60
PPNNSLPTLS QSVPPPSSVP SPPPSQPLSS DFDSAELGSG AAGDEPARTL KRPRLVWTPQ  120
LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGLSSGGGGG  180
GGNGGGGALS AADAATDHLF ASAPVPHHFL HPVRPNSDHF LPFVPVAAAL QHHHNQQMAA  240
AAVVAAQQQY HRQVGQFGSP PGGQYEHGFL ARQPQPVHRM AVPVPAHSPT YVEDLDSPVG  300
GGGGGGRKVL TLFPTGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-32112168157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036386.11e-131PREDICTED: transcription factor PCL1
SwissprotO222105e-66MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2G5EBV20.0A0A2G5EBV2_AQUCA; Uncharacterized protein
STRINGAquca_009_00074.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-77G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]