PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G023300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 498aa    MW: 55908.2 Da    PI: 5.66
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G023300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.9e-27193246155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W  eLH++Fv av+qL G +kA+Pk+ilelm+v+g+t+e+v+SHLQkYRl
  Aqcoe1G023300.1.p 193 KQRVVWCVELHDKFVLAVNQL-GVDKAVPKKILELMDVPGITRENVASHLQKYRL 246
                        79*******************.********************************8 PP
2Response_reg68.33.4e-23171231107
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + +  ++++l++ +y ev++a+ + +a  +l+ek+  +Dl++  + mp++dG++ll++i  e  +lp+i+++  ++ +++   +
  Aqcoe1G023300.1.p  17 VLVVDDDTTSLTSIEEMLRSCDY-EVKTASRAMDAFSMLREKKnsFDLVMSEVHMPEIDGFKLLEQIGMEM-DLPVIMISEDESADTVMTGI 106
                        89*********************.***************888889**********************6644.8******************* PP

                        HTTESEEEESS--HHHH CS
       Response_reg  91 kaGakdflsKpfdpeel 107
                         +Ga d+l Kp+ +e +
  Aqcoe1G023300.1.p 107 TLGACDYLIKPVRKEMV 123
                        ***********877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.69E-3113135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-3814138No hitNo description
SMARTSM004481.6E-2415126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.22616131IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-2117122IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.90E-2218130No hitNo description
Gene3DG3DSA:3.40.50.23003.5E-38174195No hitNo description
SuperFamilySSF466896.63E-19190250IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-24193246IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.6E-29196251IPR009057Homeodomain-like
CDDcd008820.00554220306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVSKSGFRNY FPNGIRVLVV DDDTTSLTSI EEMLRSCDYE VKTASRAMDA FSMLREKKNS  60
FDLVMSEVHM PEIDGFKLLE QIGMEMDLPV IMISEDESAD TVMTGITLGA CDYLIKPVRK  120
EMVKTLWQHV VRRKKRDKID VDESNGNGSQ NQNPAADGEY ACSMNETSCK SLKKRKEEES  180
EVEGRDQTST KKKQRVVWCV ELHDKFVLAV NQLGVDKAVP KKILELMDVP GITRENVASH  240
LQKYRLYLRR LTGVSQHESK HNIQFAAPLE GHHGEMPSLN ELDLQDISPS DQLELQSLLA  300
KQPEYKQSTT NNGISIPLVN SRDPMNLFQG LTATTIDSRK LAYLCQPVHS ISATGVQFSL  360
SSNSDSIYGS QPMAESKIDS NDETIVTNTS STMYNPLLMP SMYEFPTSQF TQLYGHGVPL  420
VDSALVPDFT LTTSVCKDER SLVYDRTRVS NSIHELRQTN IRYEDSLSVK RGTLFNLSSG  480
NKHLGQQEQR SFGDDSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19189252164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RKKRDK
2169175KSLKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021806200.11e-123two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ91e-102ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2R6PW581e-121A0A2R6PW58_ACTCH; Two-component response regulator
STRINGXP_008340753.11e-122(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-97response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]