PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G025500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 422aa    MW: 47379.2 Da    PI: 8.3396
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G025500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-1765124155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++  n+ k+ k+++lg ++ +e Aa+a++ a++k++g
  Aqcoe1G025500.1.p  65 SIYRGVTRHRWTGRYEAHLWDkSTWneNQnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 124
                        57*******************777775448556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-1465124IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-1765134IPR016177DNA-binding domain
CDDcd000187.69E-1165134No hitNo description
SMARTSM003808.5E-2766138IPR001471AP2/ERF domain
PROSITE profilePS5103220.07366132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1566133IPR001471AP2/ERF domain
PRINTSPR003673.4E-56778IPR001471AP2/ERF domain
PRINTSPR003673.4E-5114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASSSSELKF KSESIAVEGE ASETVMANDH LLIYRGLKKA KKERGCTAKE RISKMPPCVA  60
GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN ENQNKKGKQV YLGAYDEEEA AARAYDLAAL  120
KYWGPGTLIN FPVSDYSRDL EEMQNTSRED YLASLRRKSS GSSRGGISKY RGLSRASQNS  180
PWETSLNQIG MPEYLSSIRY GTTEGAPTET EYPGGFCIER KIDLTGYFKW WGPNKTRRTE  240
KSFEETKFGG QQDIGSELKA LEWGVQPTEP YKMPSLGLSC ESKKHRGSAL SALSILSRSP  300
AYQSFKEKVL KEQDENDYSN ENKNNVEMDY CKSIQIPCGD GGSERLGLLG MNWLPFQRSS  360
CPLTQFISAP MLTPYNTVDP AMDPILWTSL ASVPPPRLPV VTEVTKTEPS STYACFHQEE  420
R*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247507.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-144AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2G5ECM90.0A0A2G5ECM9_AQUCA; Uncharacterized protein
STRINGAquca_009_00241.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-127AP2 family protein