PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G029900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 399aa    MW: 45598.5 Da    PI: 5.082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G029900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.57.3e-42321592128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                        p+G+rF+P+d elv +yL kk+++++l++ + i e++iyk++P dL +     + + ++k+wyf ++rd+ky++g+r+nra+ +gyWkatg 
  Aqcoe1G029900.1.p  32 PAGYRFEPRDYELVEQYLYKKINNQQLPI-NNIIEINIYKYNPYDLAAmfkpqNNNDDNKKWYFITPRDRKYRNGSRPNRAAGDGYWKATGA 122
                        89***************************.7799************84355533334667******************************** PP

                NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        dk + +   + +g kk Lvfykg+ p+gektdW+m e+r+
  Aqcoe1G029900.1.p 123 DKIIEH---NIIGKKKALVFYKGKPPNGEKTDWIMYEFRI 159
                        999977...89***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4628186IPR003441NAC domain
PROSITE profilePS5100547.931186IPR003441NAC domain
PfamPF023651.2E-2132159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MNNAAEDLKT VAAAHYDNDE RQEIDKYLSS FPAGYRFEPR DYELVEQYLY KKINNQQLPI  60
NNIIEINIYK YNPYDLAAMF KPQNNNDDNK KWYFITPRDR KYRNGSRPNR AAGDGYWKAT  120
GADKIIEHNI IGKKKALVFY KGKPPNGEKT DWIMYEFRIE PTTTRKRTHE HDMRLDDYVL  180
VRIHEKDTSA DQADPKAKAE KKVQKVRKAP KAKRIKPVVD QVDDQIMSLQ SLPNGNTTTV  240
NQITSMEHPP SNCDLLSPDS NITDANNDYD EFGKIEQFLS SNIDIQSAFD EVWNNICQGD  300
QDNQHMVPGM GADLYGNNDG FEGTIPDDGL YPPYYFDSNN SFATQTLNDV KWESNPADGQ  360
FPQPCNNAFM GSQTMTNVNG NFSEPKPANC GYYCHQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-473118615168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-40NAC domain containing protein 32