PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G030100.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 708aa    MW: 77155.2 Da    PI: 6.2615
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G030100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.8e-08281301526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C++Gd C +aHg
  Aqcoe1G030100.3.p 281 PCPEFRK-GACRRGDLCEYAHG 301
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.48E-1511137IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0685787IPR002110Ankyrin repeat
PROSITE profilePS5029715.00857165IPR020683Ankyrin repeat-containing domain
CDDcd002041.27E-1257135No hitNo description
Gene3DG3DSA:1.25.40.208.2E-1657137IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-857125IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.00792127IPR002110Ankyrin repeat
SMARTSM002480.001592124IPR002110Ankyrin repeat
SMARTSM003562.9E-5276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568281303IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5281301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4309339IPR000571Zinc finger, CCCH-type
SMARTSM0035667311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MNHLTVETED SFSSLLELAA NNDIDGFKRS IDRDVSAIDE VGLWYGRQKG SKQMVLEHRT  60
PLMVAATYGS VDVLQVILSL SEVDVNRSCG PDKSTALHCA ASGGSVLAVE VVKLLLLSGA  120
DPNCVDASGR CPADVIVVSP KLPDLRVSLE ELLTNNGSYG SAVEHNLRIV TATSNSNSPS  180
LSSSPDNGSP SSDSDSTSSP MMKYNDLPTS LMSERKEYPI DPSLPDIKNS IYATDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPEFRKGAC RRGDLCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCMRRVCFF AHTTEELRPL YVSTGSAVPS PRSAASAAME  360
MAAALSLLPA SPSSGSVMSP SPFTPPMSPS ASNISHSSMA WPQPNVPTLH LPGSNLQSSR  420
LRSSLNARDI QTDDYNMLAD YELQQQHQQL LNELSCFSQP RMIPNSANRP IRTKSLAPSN  480
LDDLFSAELS SSPRYSDQSM SSAVFSPSHK SAVLNQFQQQ QSMLSPINTN VFSPKNVDHH  540
LLQASFGGVH SPGRMSPRSM EPISPMSSRA SAFSQREKLH QQQQLHSLSS RELGSITSGG  600
AGSPGNSWTK WGSPNGKLDW AVNGDELGPQ RRTTSFEPGN NGEEPDLSWV QSLVKESPPE  660
IKEKPVVQNS ATAFSGENSN SNTQIESVDH AVLGAWLEQM QLDQLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842333.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_018842334.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2G5ECT90.0A0A2G5ECT9_AQUCA; Uncharacterized protein
STRINGAquca_009_00279.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]