PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G030300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 283aa    MW: 31968.6 Da    PI: 8.1179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G030300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192978255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Aqcoe1G030300.1.p 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 78
                       69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.25E-322888No hitNo description
SMARTSM003805.4E-372992IPR001471AP2/ERF domain
PfamPF008473.9E-132978IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-312987IPR001471AP2/ERF domain
PROSITE profilePS5103222.8932986IPR001471AP2/ERF domain
PRINTSPR003671.5E-103041IPR001471AP2/ERF domain
PRINTSPR003671.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MENCRRTPYK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLHS NFNPLNKSQK LKWFPSKNFI SMFPSCSLLN  120
LNGQHNVHVI HQRLQELKRN DTLKQSSMAS SSTHDSNYEL QIADTKRNSV SLANNVSVAN  180
PSAQKQSENF TEKPQLDLTE FLQKLGILKE DSVSDDSNTS ASFQVPDFAL ENNGPVASNE  240
PTFNWDALME MHGLDHHPSA QATNFPLDDL HEASYSASIW NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033305.11e-122PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX54e-83DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2G5ED090.0A0A2G5ED09_AQUCA; Uncharacterized protein
STRINGAquca_009_00282.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-75ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]