PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G032100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 287aa    MW: 31194.6 Da    PI: 8.2464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G032100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015220242223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp C+  Fs+  +L+ H  + H
  Aqcoe1G032100.1.p 220 ECPQCHANFSSVTSLVEHVEKvH 242
                        5*****************99888 PP
2zf-C2H214.20.00013259280323
                        ETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                        Cp+C+k F ++  L+ H  + H
  Aqcoe1G032100.1.p 259 CPKCSKGFVDPVALVEHVERaH 280
                        *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.57E-12459No hitNo description
PROSITE profilePS510397.5371059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-91153IPR000058Zinc finger, AN1-type
SMARTSM001541.2E-41352IPR000058Zinc finger, AN1-type
PfamPF014281.1E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.6E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.2E-993143No hitNo description
PROSITE profilePS510397.92498145IPR000058Zinc finger, AN1-type
SMARTSM001540.0079101142IPR000058Zinc finger, AN1-type
PfamPF014284.9E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.12219247IPR007087Zinc finger, C2H2
SMARTSM003550.099219242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-4223247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.016257285IPR007087Zinc finger, C2H2
SMARTSM003559.6257280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CYKVFCLQHR SFATHHCPNA NKQDVTVVIC  60
PLCAKGVRLV PDEDPNITWE THVNTDCDPS NYEKATKKKK CPVAGCRELL TFSNTIKCRD  120
CSIDHCLKHR FGPDHKCPGP KKPSASLGFP FMALLNKSQK EKSRSKQSSA AALPNWATSL  180
KNAASSVRAS AEASMEKLSK MALDGIGQSS SSNGNGEVEE CPQCHANFSS VTSLVEHVEK  240
VHESGNKRAG VQKVTIDACP KCSKGFVDPV ALVEHVERAH GGMSKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102532.11e-159zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ0D5B91e-125SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2G5ED200.0A0A2G5ED20_AQUCA; Uncharacterized protein
STRINGAquca_009_00297.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]