PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G036400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 279aa    MW: 31693.2 Da    PI: 9.9671
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G036400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-283080151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien + rqvtfskRr+g++KKA+ELS+LCdaeva+iifs+tgkl+e+ss
  Aqcoe1G036400.1.p 30 KKIENATSRQVTFSKRRAGLIKKAQELSILCDAEVALIIFSNTGKLFEFSS 80
                       68***********************************************96 PP
2K-box67.44.7e-23961934100
              K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++s ++  ++++ ++e++ Lk+e+++L+  + +++G++L+ Ls+keLq+Le+qL++++ +++ +K++ll+eq+e+++ +e+++  en +L
  Aqcoe1G036400.1.p  96 LSDNSlVQYDTEKQHSKEVTVLKEEVSKLRMAHLRMMGKELTGLSFKELQHLENQLNEGILSVKGRKEQLLMEQLENSRLQEHRAMVENGSL 187
                        5566666677788899**************************************************************************** PP

              K-box  95 rkklee 100
                        r+++ee
  Aqcoe1G036400.1.p 188 RQQVEE 193
                        ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.82282IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-422281IPR002100Transcription factor, MADS-box
CDDcd002651.18E-422397No hitNo description
SuperFamilySSF554558.89E-332396IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292444IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PfamPF003197.9E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-294459IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-295980IPR002100Transcription factor, MADS-box
PfamPF014865.6E-17105191IPR002487Transcription factor, K-box
PROSITE profilePS5129713.142107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKIREQARKE KEKEKEKEKV KMGRGKIEIK KIENATSRQV TFSKRRAGLI KKAQELSILC  60
DAEVALIIFS NTGKLFEFSS SGMKRTLSRY NKSQDLSDNS LVQYDTEKQH SKEVTVLKEE  120
VSKLRMAHLR MMGKELTGLS FKELQHLENQ LNEGILSVKG RKEQLLMEQL ENSRLQEHRA  180
MVENGSLRQQ VEELRSMLPV AELPVRPYLE LHHTERKPSH TKHDVISSSN AGCNCIVEKP  240
GESDTSLHLG LSSEVHRKRK APERASCSND SGTETSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-222290169MEF2C
5f28_B9e-222290169MEF2C
5f28_C9e-222290169MEF2C
5f28_D9e-222290169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802500.0JX680250.1 Aquilegia coerulea MADS-box protein AGL15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279516.11e-122PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_019056050.11e-122PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ392952e-73AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLK7X7F10.0K7X7F1_AQUCA; MADS-box protein AGL15
STRINGAquca_009_00337.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-75AGAMOUS-like 15