PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G055800.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB

Protein Properties

Length: 291aa MW: 32914.5 Da PI: 7.5005

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G055800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.6e-17	37	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l d++++ G g+W+t +++ g+ R++k+c++rw +yl Aqcoe1G055800.2.p 37 RGPWTPEEDEVLSDYIRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 84 89****************************99**********97 PP
2	Myb_DNA-binding	47	5.8e-15	95	135	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Aqcoe1G055800.2.p 95 PDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNDIKNYWNTHL 135 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-22	28	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.616	32	84	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-28	34	131	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-12	36	86	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-14	37	84	IPR001005	SANT/Myb domain
CDD	cd00167	3.61E-9	39	84	No hit	No description
PROSITE profile	PS51294	24.816	85	139	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-24	87	140	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-13	89	137	IPR001005	SANT/Myb domain
CDD	cd00167	1.22E-10	95	135	No hit	No description
Pfam	PF00249	6.9E-14	95	135	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRNPSMASKV TCSSSSPASG STTSKITPCC SKEGLKRGPW TPEEDEVLSD YIRREGEGRW 60 RTLPKRAGLL RCGKSCRLRW MNYLRPSLKR GQIAPDEEDL ILRLHRLLGN RWALIAGRIP 120 GRTDNDIKNY WNTHLSKKLI SQGIDPRTHK PLTPESSSCF RPLAPEPNLN NNNTTNHQRN 180 SPSMDEVSCG GNEDSIKNNT NDHLEGIIDH HQHNNWQNYN ALLALQRTTN EENDEHIGYS 240 TGEDVFSSLL NSWVYDEVFG YSIYGGSINF SQSGFDDECK RFSDHVNKCF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	35	139	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253955	0.0	AC253955.1 Aquilegia coerulea clone COL08-M12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021680699.1	1e-104	transcription repressor MYB5-like
Swissprot	Q38850	5e-78	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A2G5EDW2	0.0	A0A2G5EDW2_AQUCA; Uncharacterized protein
STRING	Aquca_009_00496.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-78	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Aqcoe1G055800.2.p

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]