PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G059800.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 238aa    MW: 28579.1 Da    PI: 9.0591
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G059800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-077699226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       +++ Cr + +  tC++G+ C+F+H 
  Aqcoe1G059800.2.p 76 REATCRQYEE-NTCNRGGYCNFMHL 99
                       6789**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018482.3E-16318IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3301.6E-4671IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.71E-5975IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.3E-165680IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.58774101IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-57699IPR000571Zinc finger, CCCH-type
PRINTSPR018482.3E-1691103IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDPRKIQEHF EDFYEDLFEE LSKYGERLKV LTSATTWLIT CWESTTTCSN ALRNLTGRFY  60
AGWPIIVDFS PVTDFREATC RQYEENTCNR GGYCNFMHLK MISRDLRRHL FGRYRRRHSR  120
SRSRSRSPYR HHSYEERSHG SLRDRKYDER DHHYHDDRAR RRRGRSTSPG GRRNRSPERE  180
GSAERRAKIE QWNREREQAG SDNRDSHATD NNNDNEFAQY GGEYYDPQQQ QEGGYHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-22411667185Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278242.12e-89PREDICTED: splicing factor U2af small subunit B-like
RefseqXP_010278244.12e-89PREDICTED: splicing factor U2af small subunit B-like
SwissprotQ9ZQW82e-52U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A2G5DA991e-173A0A2G5DA99_AQUCA; Uncharacterized protein
STRINGAquca_025_00267.11e-174(Aquilegia coerulea)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]