PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G060700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 305aa    MW: 33744.9 Da    PI: 7.3109
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.76e-17234268135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C +  Tp+WR gp g+ktLCnaCG+++++ +l
  Aqcoe1G060700.1.p 234 CTHCLSQRTPQWRAGPLGPKTLCNACGVRFKSGRL 268
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.292228264IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-15228282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-13228265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.85E-14229292No hitNo description
CDDcd002021.13E-11233280No hitNo description
PfamPF003209.6E-15234268IPR000679Zinc finger, GATA-type
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDFCRNVSVS NGLPAEYPSE QVISPAYSKH NGTNYNSASL DDLFPIQNTE GDVSLEWLSA  60
FVEDCLSSTG NCIPAAPTTT LDQANSPKPK PTTTTTTITQ IIPKPIENFQ KTLPSLQIQK  120
FSIPGKARSK RRRSSSITNT PGPHHHLHKK IQPFHVISSD PPLLHQAYWL ADSELILPKK  180
MDNNTSSGDD EEEEEEEINE EEEKMMMMGG GDNNKDNLLG SSSIESSHGQ PRRCTHCLSQ  240
RTPQWRAGPL GPKTLCNACG VRFKSGRLLP EYRPAKSPTF VSYKHSNSHK KVMEMRMSVP  300
STPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257696.11e-107PREDICTED: GATA transcription factor 2-like
TrEMBLA0A2G5EE720.0A0A2G5EE72_AQUCA; Uncharacterized protein
STRINGAquca_009_00534.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.14e-36GATA transcription factor 2