PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G063700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 265aa    MW: 28717.3 Da    PI: 8.0129
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G063700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.3e-40661671101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasnv+kll ++p+++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+
  Aqcoe1G063700.1.p  66 PCGACKFLRRKCISGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPTNQRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQ 157
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallkeel 101
                        ael+ ++++l
  Aqcoe1G063700.1.p 158 AELSIVQTQL 167
                        *****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.50965167IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3966164IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLSFPYILAP SPSFLCSPFP CLRRYLIHMD DQQGDGHSSD KQPCNGRRSG KRIAPPITTV  60
VSSTAPCGAC KFLRRKCISG CIFAPYFGSD QGAARFAAVH KVFGASNVSK LLLHIPTNQR  120
HDAVVTISYE AQARLSDPVY GCVSTILALQ QQVASLQAEL SIVQTQLMNS RLAVANALQS  180
SQQQQQQQHI SVLQPAYSNN SSASNNLVNL GSFPPSFDLA VETPPSSRSF RPTGVSGPSR  240
DEDEDEDEDS RNPVIYTNHI LHGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-39591694113LOB family transfactor Ramosa2.1
5ly0_B4e-39591694113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266765.11e-102PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2G5EES31e-172A0A2G5EES3_AQUCA; Uncharacterized protein
STRINGAquca_009_00560.11e-173(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-60LOB domain-containing protein 20