PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G074300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 190aa MW: 20870.6 Da PI: 9.1692

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G074300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	233.9	3.8e-72	2	163	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 +++ se+vCyv+CnfCntilavsvP tslf+vvtv CGhC++llsvn++ +q + +++l +l+++++ +++++++ s + ++sa+ Aqcoe1G074300.1.p 2 SLDVVSERVCYVHCNFCNTILAVSVPCTSLFNVVTVGCGHCANLLSVNMKALVQPNPPHQNL--QLQNHQKTSSGTSSKDCGSSSTITKSAT 91 567789**************************************9988887777777664..4445555555555555555444444444 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s +++e++e +r+ p+ PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Aqcoe1G074300.1.p 92 SSD-----NSSENREPQRMLPIRPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163 333.....34667888899999999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-74	6	163	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-8	109	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.6E-5	112	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLDVVSERV CYVHCNFCNT ILAVSVPCTS LFNVVTVGCG HCANLLSVNM KALVQPNPPH 60 QNLQLQNHQK TSSGTSSKDC GSSSTITKSA TSSDNSSENR EPQRMLPIRP PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLMMDGSKR LKVGEGFTAD 180 GTQKSHGFF*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF277378	6e-68	JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651636.1	4e-90	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-74	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2G5EES5	1e-140	A0A2G5EES5_AQUCA; Uncharacterized protein
STRING	Aquca_009_00652.1	1e-140	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-65	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G074300.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]