PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G074300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 188aa MW: 20629.3 Da PI: 9.1692

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G074300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	230.9	3.2e-71	2	161	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 +++ se+vCyv+CnfCntilavsvP tslf+vvtv CGhC++llsvn++ +q + +++l+ ++++ +++++++ s + ++sa+ Aqcoe1G074300.2.p 2 SLDVVSERVCYVHCNFCNTILAVSVPCTSLFNVVTVGCGHCANLLSVNMKALVQPNPPHQNLQ----NHQKTSSGTSSKDCGSSSTITKSAT 89 567789**************************************99888888777777643....3334444444444444443333333 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +++e++e +r+ p+ PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Aqcoe1G074300.2.p 90 S-----SDNSSENREPQRMLPIRPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 3.....3345677888899999999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-74	6	161	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-8	107	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.5E-5	110	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSLDVVSERV CYVHCNFCNT ILAVSVPCTS LFNVVTVGCG HCANLLSVNM KALVQPNPPH 60 QNLQNHQKTS SGTSSKDCGS SSTITKSATS SDNSSENREP QRMLPIRPPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LMMDGSKRLK VGEGFTADGT 180 QKSHGFF*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF277378	5e-65	JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651636.1	6e-90	PREDICTED: putative axial regulator YABBY 2 isoform X1
Refseq	XP_010651637.1	8e-90	PREDICTED: putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	3e-75	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2G5EEV4	1e-138	A0A2G5EEV4_AQUCA; Uncharacterized protein
STRING	Aquca_009_00652.1	1e-137	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-70	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G074300.2.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]