PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G074300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family YABBY
Protein Properties Length: 166aa    MW: 18161.5 Da    PI: 10.2574
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G074300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY187.28.1e-58113923170
              YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114
                        +vsvP tslf+vvtv CGhC++llsvn++  +q  + +++l+    ++++   +++++++ s  + ++sa++     + +++e++e +r+ p
  Aqcoe1G074300.3.p   1 MVSVPCTSLFNVVTVGCGHCANLLSVNMKALVQPNPPHQNLQ----NHQKTSSGTSSKDCGSSSTITKSATS-----SDNSSENREPQRMLP 83 
                        59***********************99888888777777643....33344444444444444433333333.....334567788889999 PP

              YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +  PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Aqcoe1G074300.3.p  84 IRPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 139
                        9999**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.5E-611139IPR006780YABBY protein
SuperFamilySSF470953.27E-885132IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-588131IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVSVPCTSLF NVVTVGCGHC ANLLSVNMKA LVQPNPPHQN LQNHQKTSSG TSSKDCGSSS  60
TITKSATSSD NSSENREPQR MLPIRPPPEK RQRVPSAYNR FIKEEIQRIK ASNPDISHRE  120
AFSTAAKNWA HFPHIHFGLM MDGSKRLKVG EGFTADGTQK SHGFF*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2773785e-65JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651636.11e-72PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB03e-60YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2G5EER61e-120A0A2G5EER6_AQUCA; Uncharacterized protein
STRINGAquca_009_00652.11e-118(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-55YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]