PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G074300.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family YABBY
Protein Properties Length: 168aa    MW: 18402.8 Da    PI: 10.2574
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G074300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY190.21e-58114123170
              YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114
                        +vsvP tslf+vvtv CGhC++llsvn++  +q  + +++l  +l+++++   +++++++ s  + ++sa++s      +++e++e +r+ p
  Aqcoe1G074300.4.p   1 MVSVPCTSLFNVVTVGCGHCANLLSVNMKALVQPNPPHQNL--QLQNHQKTSSGTSSKDCGSSSTITKSATSSD-----NSSENREPQRMLP 85 
                        59***********************9988887777777664..4445555555555555555444444444333.....3466788889999 PP

              YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +  PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Aqcoe1G074300.4.p  86 IRPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 141
                        9999**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.0E-611141IPR006780YABBY protein
SuperFamilySSF470953.27E-887134IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.5E-590133IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVSVPCTSLF NVVTVGCGHC ANLLSVNMKA LVQPNPPHQN LQLQNHQKTS SGTSSKDCGS  60
SSTITKSATS SDNSSENREP QRMLPIRPPP EKRQRVPSAY NRFIKEEIQR IKASNPDISH  120
REAFSTAAKN WAHFPHIHFG LMMDGSKRLK VGEGFTADGT QKSHGFF*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2773785e-68JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651636.17e-73PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB04e-59YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2G5EES51e-121A0A2G5EES5_AQUCA; Uncharacterized protein
STRINGAquca_009_00652.11e-121(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-50YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]