PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G074300.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family YABBY
Protein Properties Length: 141aa    MW: 15655.5 Da    PI: 10.7293
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G074300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY140.91.4e-431511471170
              YABBY  71 lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                        +l++++++++ ++s++  ++s+ t+ ++++ +++e++e +r+ p+  PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWah
  Aqcoe1G074300.5.p  15 QLQNHQKTSSGTSSKDCGSSSTITKSATSSDNSSENREPQRMLPIRPPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAH 106
                        3445555555555555555555555555555667888999999*9999******************************************** PP

              YABBY 163 fPkihfgl 170
                        fP+ihfgl
  Aqcoe1G074300.5.p 107 FPHIHFGL 114
                        ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.7E-431114IPR006780YABBY protein
SuperFamilySSF470952.23E-860107IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.2E-563106IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKALVQPNPP HQNLQLQNHQ KTSSGTSSKD CGSSSTITKS ATSSDNSSEN REPQRMLPIR  60
PPPEKRQRVP SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLMMDGSK  120
RLKVGEGFTA DGTQKSHGFF *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2773784e-68JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651636.13e-54PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-46YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2G5EES51e-100A0A2G5EES5_AQUCA; Uncharacterized protein
STRINGAquca_009_00652.11e-101(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-42YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]