PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G074300.6.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family YABBY
Protein Properties Length: 100aa    MW: 11183.9 Da    PI: 10.9169
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G074300.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY47.56.9e-15147672134
              YABBY  72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                        l++++++++ ++s++  ++s+ t+ ++++ +++e++e +r+ p+  PPekrqrvPsaynrfik
  Aqcoe1G074300.6.p  14 LQNHQKTSSGTSSKDCGSSSTITKSATSSDNSSENREPQRMLPIRPPPEKRQRVPSAYNRFIK 76 
                        344444444555555555555555555555677888999999*9999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-13176IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MKALVQPNPP HQNLQNHQKT SSGTSSKDCG SSSTITKSAT SSDNSSENRE PQRMLPIRPP  60
PEKRQRVPSA YNRFIKCVFS YILLKCFGFL IRTKVFTKI*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2773783e-65JF277378.1 Aquilegia flabellata clone AA12 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651636.11e-14PREDICTED: putative axial regulator YABBY 2 isoform X1
RefseqXP_010651637.11e-14PREDICTED: putative axial regulator YABBY 2 isoform X3
RefseqXP_020868331.18e-15putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-14YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2G5EEQ81e-66A0A2G5EEQ8_AQUCA; Uncharacterized protein
STRINGAquca_009_00652.13e-45(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-09YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]