PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G076700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 339aa    MW: 37004.5 Da    PI: 9.1233
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G076700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.7e-32169225158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d p++VNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh hAlrR+Rg+gGrF
  Aqcoe1G076700.1.p 169 DGPIFVNAKQYHGILRRRQSRAKAELENKL-IKIRKPYLHESRHLHALRRARGCGGRF 225
                        57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-35167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.483168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-26171225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-23171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-23202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIRLVFTMQT ECFKEHGGIF QNPIIQPLPL PSLPWWSGLG SQAVYGDSFG QLKAISGDYL  60
TGGNQAAIVP RQGTRGTDQA SDKDNHNASQ FSILPGDSKD PGKEEKVHQE SLSRQSSQLG  120
YQTCFELGLG QPLICANYPY IDQYYGVLTT YGAQTTGRIM LPLNVKSEDG PIFVNAKQYH  180
GILRRRQSRA KAELENKLIK IRKPYLHESR HLHALRRARG CGGRFLTKNG KSGKAGTAQD  240
NSGLRRCSPP SGSTSSEVLQ SESRNLNSSK ELYGGDSSLS GSEVTSLYSR GGLDRFHIDH  300
LHSSAFYSLS NMIDSGQGIN TTNRWVAAAD GCCDLLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-18171231464NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247683.11e-139PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBLA0A2G5EF030.0A0A2G5EF03_AQUCA; Uncharacterized protein
STRINGAquca_009_00676.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-55nuclear factor Y, subunit A10