PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G083200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 302aa    MW: 34195.4 Da    PI: 8.9258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G083200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-092570346
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       +W++eE +l+ +a + + ++   +W ++a +++ g+t  ++ + +  
  Aqcoe1G083200.1.p 25 KWSQEENKLFENALAIYDKDtpdRWQKVATMIP-GKTVMDVMNQYKE 70
                       8********************************.****999999875 PP
2Myb_DNA-binding44.73.1e-14129173347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Aqcoe1G083200.1.p 129 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 173
                        8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-51973IPR009057Homeodomain-like
PROSITE profilePS512939.7822175IPR017884SANT domain
SMARTSM007171.3E-102274IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-132479IPR009057Homeodomain-like
PfamPF002498.7E-82470IPR001005SANT/Myb domain
CDDcd001677.36E-92572No hitNo description
Gene3DG3DSA:1.10.10.602.1E-12120178IPR009057Homeodomain-like
PROSITE profilePS5129420.486122178IPR017930Myb domain
SuperFamilySSF466898.22E-17124177IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17125177IPR006447Myb domain, plants
SMARTSM007175.3E-13126176IPR001005SANT/Myb domain
CDDcd001673.09E-11129174No hitNo description
PfamPF002491.1E-12129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMKWGMEILN PHTNWLLEEN KMTTKWSQEE NKLFENALAI YDKDTPDRWQ KVATMIPGKT  60
VMDVMNQYKE LVNDVSDIEA GLIPIPGYTT SSFTLDWASN RTFAQSFDSN GKRGSSGRPS  120
DQERKKGVPW TEEEHKLFLL GLKKYGKGDW RNISRNFVIT RTPTQVASHA QKYFIRQLSG  180
GKDKRRSSIH DITTVSLTDN RPTSPDNSTS PPMDQTMLQQ HSELSGTPRA LFDWNQPHDG  240
SNMVFNSTSA NMFVPPSFGV NSYGMKMEGG QDLHRGIIHA SQFGPHNTFF QMQSSQCHPR  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1626911176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8053761e-113FJ805376.1 Aquilegia alpina DIV protein (DIV) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026425763.11e-152transcription factor DIVARICATA-like
SwissprotQ8S9H71e-122DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G5EF510.0A0A2G5EF51_AQUCA; Uncharacterized protein
STRINGAquca_009_00736.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-91MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]