PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G091400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB

Protein Properties

Length: 410aa MW: 44356.4 Da PI: 5.7588

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G091400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	70	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++Iar ++ gR++k+c++rw + Aqcoe1G091400.1.p 70 KGPWSPEEDNVLSRLVAKFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 115 79****************************.*********985 PP
2	Myb_DNA-binding	54.1	3.6e-17	122	166	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++v a++ +G++ W+ ar ++ gRt++ +k++w++ Aqcoe1G091400.1.p 122 RKPFTEEEDRIIVAAHAIHGNK-WAVLARLLP-GRTDNAIKNHWNST 166 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.539	65	120	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-30	68	163	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-16	69	118	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-17	70	115	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-26	71	123	IPR009057	Homeodomain-like
CDD	cd00167	3.08E-15	72	114	No hit	No description
PROSITE profile	PS51294	21.434	121	171	IPR017930	Myb domain
SMART	SM00717	2.5E-16	121	169	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	122	166	IPR001005	SANT/Myb domain
CDD	cd00167	2.61E-12	124	167	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-23	124	170	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MEREMKELKE QIDVFLAVNN INGGGVGART SGDSTTTVTV SEGNVIGEGG DNNENDLNNS 60 AGNGSDDRVK GPWSPEEDNV LSRLVAKFGP RNWSLIARGI PGRSGKSCRL RWCNQLDPGV 120 KRKPFTEEED RIIVAAHAIH GNKWAVLARL LPGRTDNAIK NHWNSTLRRR RIDFNKFRAA 180 SGEMMEDISH DKTKASSEDT LSCGDVNSFK SLEGKDVNSL DIISSQYDDR AQSNEDYCTN 240 KTNEPPTLFR PAARVSAFSI YNPPNGSTNA AQVSSAVPSN EPLIQTTPKP DFSICRLFEG 300 VCDEPQVPAR CGHGCCDNKG VVMARNSLLG AEFVEYEELP PFSSHELAAI ATDLSKIAWL 360 KSGLENSNTT VIDNAGRRGV PPGVCVGVGK TDAMSSQMSS QPFVLPAKS*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MEREMKELKE QIDVFLAVNN INGGGVGART SGDSTTTVTV SEGNVIGEGG DNNENDLNNS  60
AGNGSDDRVK GPWSPEEDNV LSRLVAKFGP RNWSLIARGI PGRSGKSCRL RWCNQLDPGV  120
KRKPFTEEED RIIVAAHAIH GNKWAVLARL LPGRTDNAIK NHWNSTLRRR RIDFNKFRAA  180
SGEMMEDISH DKTKASSEDT LSCGDVNSFK SLEGKDVNSL DIISSQYDDR AQSNEDYCTN  240
KTNEPPTLFR PAARVSAFSI YNPPNGSTNA AQVSSAVPSN EPLIQTTPKP DFSICRLFEG  300
VCDEPQVPAR CGHGCCDNKG VVMARNSLLG AEFVEYEELP PFSSHELAAI ATDLSKIAWL  360
KSGLENSNTT VIDNAGRRGV PPGVCVGVGK TDAMSSQMSS QPFVLPAKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	9e-42	69	170	3	104	C-Myb DNA-Binding Domain
1msf_C	9e-42	69	170	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256736.1	1e-161	PREDICTED: uncharacterized protein LOC104597048 isoform X1
Swissprot	Q42575	1e-96	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A2G5EFI4	0.0	A0A2G5EFI4_AQUCA; Uncharacterized protein
STRING	Aquca_009_00809.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-98	myb domain protein 109

Link Out ? help Back to Top
Phytozome	Aqcoe1G091400.1.p

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]