PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G101000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 289aa MW: 33330.2 Da PI: 9.6283

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G101000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.2	1.4e-18	9	102	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+ ++d +++ +l++p +f+++++++ e+++ ++ e sW v++ +++ ++++lt+GWk+Fv+++ L Df+vF+++g++ Aqcoe1G101000.1.p 9 FFKII-HADLFTTEQLRIPPDFLKHISKD-ESGIAVIDEG--PdatYSWHVQF--CRTEDGMFLTDGWKDFVRDHSLGKYDFLVFRYEGNMY 94 56655.99*************777766.4664455444..34479**..********************************999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v +f++ Aqcoe1G101000.1.p 95 F--TVAIFDQ 102 9..9999986 PP
2	B3	46.9	4.9e-15	188	279	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ l s+v s + +p +fa+++ ++++++ +led +sgr W++++ + + +++GW Fv +n+L++gD+++F+l+g + + Aqcoe1G101000.1.p 188 FIRPLYASSVYISYVVNIPADFARTYL--PTRKTEFVLEDhLSGRFWTLNF--NPGT-LNSFSGGWPTFVLDNQLEAGDICIFELTG--KWR 272 56677888888888999******95..346679*9******..5544.367999******************987..455 PP .EEEEE- CS B3 92 lvvkvfr 98 +++++fr Aqcoe1G101000.1.p 273 MRIHIFR 279 7899888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-22	4	105	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-21	5	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-17	7	101	No hit	No description
PROSITE profile	PS50863	13.606	8	103	IPR003340	B3 DNA binding domain
SMART	SM01019	9.3E-14	9	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-16	9	102	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.73E-21	181	279	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.1E-20	181	280	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.96E-18	186	279	No hit	No description
SMART	SM01019	1.6E-12	188	281	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.212	188	281	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-13	190	280	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MRSDMKPEFF KIIHADLFTT EQLRIPPDFL KHISKDESGI AVIDEGPDAT YSWHVQFCRT 60 EDGMFLTDGW KDFVRDHSLG KYDFLVFRYE GNMYFTVAIF DQTGCQKDVG FNKRMHQKLG 120 SSSGGKHRGR PLKTLIEVPR RRVGRPPKDL PLLSQVRGRS PSRRMPTEKE KADVWKAATA 180 FTSCFPYFIR PLYASSVYIS YVVNIPADFA RTYLPTRKTE FVLEDHLSGR FWTLNFNPGT 240 LNSFSGGWPT FVLDNQLEAG DICIFELTGK WRMRIHIFRA CQTTKAHF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5EFW9	0.0	A0A2G5EFW9_AQUCA; Uncharacterized protein
STRING	Aquca_009_00893.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G101000.1.p