PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G101100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 222aa    MW: 25642.6 Da    PI: 8.666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-18697198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                       ffk+  +++  ++ +l++p +f+++++ +  ++   +le +s    W v++  +kk g+++lt+GWkeFv++n L   +fvvF++ g+++f  +
  Aqcoe1G101100.1.p  6 FFKII-HPSLCTTEQLRIPPDFLKHISDED-NG-IAVLEGPSAtFDWHVRF--CKKEGGTYLTEGWKEFVRDNALGKYEFVVFRHRGNMCF--H 92
                       67766.556666677********7775442.33.68888866658999999..********************************999***..8 PP

                       EEEE- CS
                 B3 94 vkvfr 98
                       v ++ 
  Aqcoe1G101100.1.p 93 VEIYA 97
                       88876 PP
2B373.52.6e-23125217199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f   l ps v +s  l +p +fae++  + +++k+++l+d+sg+sW v++  + ++++y++ +GW  Fv++n+L++gD++vF+l+g ++   
  Aqcoe1G101100.1.p 125 FMRCLYPSCVYTSYVLNIPTDFAEAYL-P-KSKKEIVLQDRSGKSWFVTC--NPGRRQYTFCGGWTCFVNENQLNAGDVCVFELIGYMKL-- 210
                        667789999999999***********4.3.25579***************..*********************************97777.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v +fr 
  Aqcoe1G101100.1.p 211 RVYIFRV 217
                        9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-242101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-222101IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-18496No hitNo description
PROSITE profilePS5086312.647599IPR003340B3 DNA binding domain
SMARTSM010191.8E-16699IPR003340B3 DNA binding domain
PfamPF023625.0E-16697IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-28116217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-28118218IPR015300DNA-binding pseudobarrel domain
CDDcd100179.01E-24123216No hitNo description
SMARTSM010193.7E-25125218IPR003340B3 DNA binding domain
PfamPF023624.1E-20125217IPR003340B3 DNA binding domain
PROSITE profilePS5086315.82125218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKKPEFFKII HPSLCTTEQL RIPPDFLKHI SDEDNGIAVL EGPSATFDWH VRFCKKEGGT  60
YLTEGWKEFV RDNALGKYEF VVFRHRGNMC FHVEIYAKSG CKTLDEYKAK VRNAAMSFTS  120
TRPYFMRCLY PSCVYTSYVL NIPTDFAEAY LPKSKKEIVL QDRSGKSWFV TCNPGRRQYT  180
FCGGWTCFVN ENQLNAGDVC VFELIGYMKL RVYIFRVNPT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1410621830143B3 domain-containing transcription factor VRN1
4i1k_B5e-1410621830143B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EFU81e-166A0A2G5EFU8_AQUCA; Uncharacterized protein
STRINGAquca_009_00894.11e-167(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-24B3 family protein