PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G101500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 315aa    MW: 35259.5 Da    PI: 7.7888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G101500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235678123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  Aqcoe1G101500.1.p 56 YSCSFCRREFRSAQALGGHMNVH 78
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-65382No hitNo description
SMARTSM003550.00985678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDQANYWMWM RRKLTEKSQH VQASARTSYN DSWEEQAFAE DSAGPLGGCI WPPRSYSCSF  60
CRREFRSAQA LGGHMNVHRR DRARLKQSPN PHSETTLQHQ NPSTSLGVHQ YTSQVCSLDF  120
SPNSNLTASR VSIPSTLEKC NLDKTLVISP SYSSTTVQNH QIVGSLLSAQ DTHTNSIAVK  180
VVSLSDSKLE GERELRAQEL GLGVCGADYH KTDSDVSLNL IASRTRKTRS GEDDDEVISN  240
KRRKIDATSL PFFLKPKSVD RQYHIQDEVF GLSYSSSMEE IDLELRLGDR PKGTLMLIFP  300
KQICAAPCLN LQYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135178229superman protein
2l1o_A5e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090993e-55AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256822.21e-102PREDICTED: uncharacterized protein LOC104597112
TrEMBLA0A2G5EFW70.0A0A2G5EFW7_AQUCA; Uncharacterized protein
STRINGAquca_009_00898.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-30zinc-finger protein 10