PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G101600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 188aa    MW: 21382 Da    PI: 4.7272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G101600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113153123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ Fs+   L  H++ H
  Aqcoe1G101600.1.p 31 YECTFCKRGFSNAQALGGHMNIH 53
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-62957No hitNo description
Gene3DG3DSA:3.30.160.605.3E-52957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4893158IPR007087Zinc finger, C2H2
SMARTSM003550.00993153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
METTDLPCLD NLDQVSWTTE DDQGPTYVRS YECTFCKRGF SNAQALGGHM NIHRKDRAKL  60
KQPSIHNKLI TLDITKKDLS YPSISSKENK SVLEYIEDRN RTLKWPWIVP RDQDVMLATE  120
DNYVGELRQL ELFVESPLSS EDRQLSSSCS GFEEMAMKSS HGTALDLELR LGPEPLDRTT  180
TGTIEFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256823.12e-58PREDICTED: transcriptional regulator TAC1
TrEMBLA0A1U8A6114e-57A0A1U8A611_NELNU; transcriptional regulator TAC1
STRINGXP_010256823.17e-58(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-18C2H2 family protein