PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G104600.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 299aa    MW: 33365.9 Da    PI: 4.553
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G104600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.83.3e-30155208155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFve+v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Aqcoe1G104600.3.p 155 RPRLVWTPQLHKRFVEVVAHL-GIDNAVPKTIMQLMNVEGLTRENVASHLQKYRL 208
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.738152211IPR017930Myb domain
SuperFamilySSF466895.02E-20153212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30154213IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-24156208IPR006447Myb domain, plants
PfamPF002492.8E-8158207IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDEELVSKNN CQDDNDEDRV QEWETGLPTT SDLTPLSHHL ISPELASAFS ITAEPFQTML  60
DVNRASQNTL SNLRRHNSGF SSNNFKSLSS FMEDRCLDPE PIVVDEEEED EEEGEEEVDL  120
GDKRKIQSVE CIEEADSALR MENLNDDCSA RALKRPRLVW TPQLHKRFVE VVAHLGIDNA  180
VPKTIMQLMN VEGLTRENVA SHLQKYRLYL KRINEGKSSN DQLFASAPVP QSLRESSGNR  240
NLPPASVPYG APAPSMPAAG TSHGMPVGSY TGFDYHPYSM NREHQGNWPG NYVNLHVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-34155211157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457454.11e-102PREDICTED: transcription factor PCL1-like
RefseqXP_008457455.11e-102PREDICTED: transcription factor PCL1-like
RefseqXP_010256853.11e-102PREDICTED: transcription factor PCL1
TrEMBLA0A2G5EFZ20.0A0A2G5EFZ2_AQUCA; Uncharacterized protein
STRINGAquca_009_00923.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.23e-66G2-like family protein