PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G104600.5.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

G2-like

Protein Properties

Length: 269aa MW: 29962.2 Da PI: 4.8564

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G104600.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96	2.8e-30	125	178	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFve+v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Aqcoe1G104600.5.p 125 RPRLVWTPQLHKRFVEVVAHL-GIDNAVPKTIMQLMNVEGLTRENVASHLQKYRL 178 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.738	122	181	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-20	123	182	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-30	124	183	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	126	178	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	128	177	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDEELVSKNN CQDDNDEDRV QEWETGLPTT SDLTPLSHHL ISPELASAFS ITAEPFQTML 60 DVNRASQNTL SNLRRHNSED EEEGEEEVDL GDKRKIQSVE CIEEADSALR MENLNDDCSA 120 RALKRPRLVW TPQLHKRFVE VVAHLGIDNA VPKTIMQLMN VEGLTRENVA SHLQKYRLYL 180 KRINEGKSSN DQLFASAPVP QSLRESSGNR NLPPASVPYG APAPSMPAAG TSHGMPVGSY 240 TGFDYHPYSM NREHQGNWPG NYVNLHVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-33	125	181	1	57	Transcription factor LUX
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256853.1	2e-92	PREDICTED: transcription factor PCL1
Swissprot	Q9SNB4	2e-65	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A2G5EFZ2	0.0	A0A2G5EFZ2_AQUCA; Uncharacterized protein
STRING	Aquca_009_00923.1	1e-180	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	3e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G104600.5.p

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]