PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G108800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 690aa    MW: 75867.9 Da    PI: 9.719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G108800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07590639147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Aqcoe1G108800.1.p 590 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 639
                        678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.7E-7397486IPR029071Ubiquitin-related domain
PROSITE profilePS500538.677403473IPR000626Ubiquitin domain
CDDcd017690.00123407473No hitNo description
PROSITE profilePS5129415.285585644IPR017930Myb domain
SMARTSM007171.2E-7589642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10590640IPR009057Homeodomain-like
SuperFamilySSF466891.35E-15591672IPR009057Homeodomain-like
CDDcd116606.33E-17591641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MVLQKRLDYG FNGFQVPSIP KGSRSARGRR GVHKKKVVDN QMCAFELLAT VAGKLLQERE  60
STPVSSNVST GKLLQDREST PASSNVSAGR AQSIIIKGIV KKEQPDEHKP LKVEPCDQGS  120
CDESVFASEL SLQAHNESYN STEFPHFRKD ACSAHLSRLP EDPVCGKSRK EVGISNKVKR  180
SSPGYAESYK GKVGEQKAGS MLDGNVPDMC SSEDPTDMDT KPPTALVSSD SSVKVPLCKD  240
PIAHDPFPRY HDDVKVGSKD DDENSSGCTQ PSTVTLKTFR APSRIGDRRI RKLLASRYWR  300
VAPKLKDGEL SNSDGDMKPV FRKRKTCYTR QRSQRNFPFK KRKLYEQSSV STSNRVSSSE  360
GICNSSKRVI KENVIDVPSN GASGESSSAA VQESSFESRD SHVKLSIKSF KIPELFIEIP  420
ESATVGSLKR TVMEAVTAIL GGGLHVGVLL QGKKIRDDNK TLLQTGISHG NKLDGLGFAL  480
EPNAANSPPS ICPEDPPFLL PCDSQTLTRY PITPTSGASD ASLNLTTNNL TNYMESDHDS  540
VPTPTDMSID KTPSDSRALV AVPAMSVEAL AVVPLNRKSR RTELAQRRIR RPFSVSEVEA  600
LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL  660
DRVLAAHAYW SQQQAKQQVK PQTEMCLLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-605746811108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292DRRIRKL
2322342KRKTCYTRQRSQRNFPFKKRK
3333342QRNFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262528.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262529.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262530.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262531.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262533.10.0PREDICTED: telomere repeat-binding protein 5
TrEMBLA0A2G5EGB20.0A0A2G5EGB2_AQUCA; Uncharacterized protein
STRINGAquca_009_00956.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-140TRF-like 2