PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G109100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

LBD

Protein Properties

Length: 230aa MW: 24551.7 Da PI: 4.9734

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G109100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.8	8.9e-39	18	119	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC +dC++ap+f +eq ++ fa+vhk+FGasnv kll+ lp+++r da+ ++++eA+ar++dPvyG+vg i++lqqq+++l+ Aqcoe1G109100.1.p 18 PCGACKFLRRKCLADCIFAPHFVSEQgAAVFAVVHKVFGASNVAKLLQPLPDHKRLDAVLTICFEAQARLKDPVYGCVGNIFALQQQVMNLQ 109 7*********************998899********************************************************** PP DUF260 92 aelallkeel 101 ael++l++++ Aqcoe1G109100.1.p 110 AELQYLQSQI 119 ***99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.282	17	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-38	18	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSASSSSSGG GGGSSGGPCG ACKFLRRKCL ADCIFAPHFV SEQGAAVFAV VHKVFGASNV 60 AKLLQPLPDH KRLDAVLTIC FEAQARLKDP VYGCVGNIFA LQQQVMNLQA ELQYLQSQIA 120 TMEIPMPPPP SPPPMPNAPP PSLSMSDLSS TSTMPTNLEL GITFDPQMQP TWTLEQREVD 180 FQQYGGGRNT TNNNAFNDVD DLEAMEHEIQ QRRGETIGAS TSSPPRPTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-37	15	119	8	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-37	15	119	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510942.1	2e-73	LOB domain-containing protein 30-like
Swissprot	O81323	3e-57	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A2G5EG54	1e-134	A0A2G5EG54_AQUCA; Uncharacterized protein
STRING	Aquca_009_00958.1	1e-135	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	3e-53	LBD family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G109100.1.p

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]