PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G111700.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 284aa    MW: 30256.4 Da    PI: 5.323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G111700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05257279223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+k+F++   L++H +  H
  Aqcoe1G111700.4.p 257 SCKSCSKTFNSDGALQSHTKAkH 279
                        6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.3402.2E-4383IPR024057Nucleoplasmin core domain
PROSITE profilePS5015711.094256283IPR007087Zinc finger, C2H2
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSNMQFWGVE VKAGEPLKVE PDDNTLLHLS QAALGEPKKD KGSESVVLSA TVNGQKLVIG  60
TLSTDKCPQI SYDLVFEKEF ELSHNWKNGS VFFCGYKADA EEEGSDGENM FGDDSEFEEE  120
EIPVVAAENG KHVPKVEKAK ASDDKAKAAK PVSAAAKPKD MLEASDDSDE DSSEEEEEEE  180
ATPENAKQSK KRPAVSATKT SAPEKKAKLV TPQKSGGDAK KGNTHTATPH PSKQAAKTKG  240
SADKSKQQTP KSAGQVSCKS CSKTFNSDGA LQSHTKAKHS DGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270966.24e-87PREDICTED: histone deacetylase HDT1
SwissprotQ6V9I63e-69HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A2G5EGB60.0A0A2G5EGB6_AQUCA; Uncharacterized protein
STRINGAquca_009_00987.11e-180(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-34histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]