PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G113800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 554aa    MW: 61353.9 Da    PI: 7.3627
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G113800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.41.2e-15164255186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                        +W++  +  L++a++++  +l+rg+l++ +We+v+  +        +++g+ +s +qCk+k +nl+kryk +k+++++    + s++p+f++
  Aqcoe1G113800.1.p 164 EWSDTAIGSLLDAYTDKFFQLNRGNLRGRDWEDVATIVsgrssnnsKQKGC-KSVEQCKNKVDNLKKRYKVEKQRMQNY-GLTASHWPWFKK 253
                        5******************************************99555555.79***********************96.78888******* PP

           trihelix  85 le 86 
                        +e
  Aqcoe1G113800.1.p 254 IE 255
                        98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-18162257No hitNo description
Gene3DG3DSA:3.40.1160.101.2E-74304546IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B34.85311547IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.4E-59311546IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.14E-126314547No hitNo description
PfamPF006962.5E-24315526IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MASCDDDFTL IGDENQTTSN HTHHHNHQHQ PHSSQHTHHH QHLSIDPPHR FSLKPHSTTQ  60
KSTRVNEDGD DNDDDDDFSE TSFHPFSTEE DPDHTDHQFI TDSESDPKRT NSRSDKRPKE  120
NTFKSGRTSY LYKRTKISNN SNGNSDDGEY QLEVQADYRK DREEWSDTAI GSLLDAYTDK  180
FFQLNRGNLR GRDWEDVATI VSGRSSNNSK QKGCKSVEQC KNKVDNLKKR YKVEKQRMQN  240
YGLTASHWPW FKKIEQIVIN SASSKSVSDD DKSGNGSGSA NMLRPIKRYP LSTPSPGGLA  300
NNTKSKSLMN PRWRRVVFKI SGTALAGSGP QNIDPKVATL IAREVSIVCR LGVEVAIVVG  360
GRNFFCGDSW VAATALDRST AYQVGMLATV MNSILLQSAL EKLGVETRVQ TAFPMQEVAE  420
PYNKRRAIRH LEKGRVVIFG GVGAGTGNPL FTTDTASALR ASELNADAVL KGTNVDGIYD  480
SHSRTTNSSA FEHISFRELV SRGVTSMDMM AITFCEENGI PVVVFNLLEP GNISRALCGQ  540
QVGTLIDQAG RSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A5e-643055521243Uridylate kinase
3ek5_B5e-643055521243Uridylate kinase
3ek5_C5e-643055521243Uridylate kinase
3ek5_D5e-643055521243Uridylate kinase
3ek5_E5e-643055521243Uridylate kinase
3ek5_F5e-643055521243Uridylate kinase
3ek6_A5e-643055521243Uridylate kinase
3ek6_B5e-643055521243Uridylate kinase
3ek6_C5e-643055521243Uridylate kinase
3ek6_D5e-643055521243Uridylate kinase
3ek6_E5e-643055521243Uridylate kinase
3ek6_F5e-643055521243Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278264.10.0PREDICTED: uncharacterized protein LOC104612522 isoform X1
TrEMBLA0A2G5EGD70.0A0A2G5EGD7_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_009_01006.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein