PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G115500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 475aa    MW: 54689.8 Da    PI: 6.7116
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G115500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.42.3e-24110212186
           trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                        +Wt+++v++Li a+ +++++ + ++                +kk++W++vsk+m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++++
  Aqcoe1G115500.1.p 110 KWTDNMVRLLIMAVFYIGDDCSIDAndtsctikkkggggvlQKKGKWKSVSKAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRV 201
                        7****************999997655677889999999999**********************************************55*** PP

           trihelix  76 sstcpyfdqle 86 
                        +++ +++d ++
  Aqcoe1G115500.1.p 202 VENQSLLDTMD 212
                        ********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-21108238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEANDMSGRM LPGMASGLLG LEMPLHQHQH QHQHQQQLHF SHHQQQSHQQ QLVSYPTHET  60
QSQQSIKQNN YPHSNKAKQQ QLSDEDENGY NVEDGGDDAK KKMSPWHRMK WTDNMVRLLI  120
MAVFYIGDDC SIDANDTSCT IKKKGGGGVL QKKGKWKSVS KAMMEKGFYV SPQQCEDKFN  180
DLNKRYKRVN DILGKGTACR VVENQSLLDT MDHLTPKLKE EVRKLLNSKH LFFREMCAYH  240
NSGGGGGNNG GNQSLETAAE SSHHQQQQHC FHSPENGTVG ANPRNRLETL GLKTANGGRE  300
VVDVDDEDDD DDDNEDEEDD NDDEEETEGG SGGGRRENNG DENELVSRKR KRREMFSSPL  360
MKQMSCELVG VLQDGTKSPW ERRQWMLSRM FQLEEQKVSY QYQAFELEKQ RVKWIKFSAK  420
KEREMERMKL NNERMRLENE RMVLLLRKKE LELFHRHQQQ QSCNKRPDPS SLAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289063.11e-171transcriptional regulator EFH1 isoform X1
TrEMBLA0A2G5EGL10.0A0A2G5EGL1_AQUCA; Uncharacterized protein
STRINGAquca_009_01017.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-70sequence-specific DNA binding transcription factors