PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G118200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 694aa    MW: 80668.7 Da    PI: 8.251
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G118200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-11751184890
               FAR1  48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         e++ r+ a trtgCka++++ k+k  +kw+vt++++ HnH+l+
  Aqcoe1G118200.1.p  75 FEERVRNVADTRTGCKAMMTIWKNKvGEKWVVTQVVEVHNHTLV 118
                        46788999****************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-874118IPR004330FAR1 DNA binding domain
PfamPF105511.3E-29243337IPR018289MULE transposase domain
PROSITE profilePS509669.804484522IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-5497518IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-5497524IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MIENSSSEGL QTTEPNIDEK VQKIINEEVN EDGDNIIGRP CVGMEFDSQD EAYNFYNHYV  60
GRVGFRSRGS KCKSFEERVR NVADTRTGCK AMMTIWKNKV GEKWVVTQVV EVHNHTLVTP  120
SKRYLFRSQR KMEPIQKKIA EDMRSVGIRT SLMVDFLASE VGGVQNVGFT RKDVNNYLNA  180
KQGRFCQNPR RLDAQALLDH LQKQQLDNPS FSYSIQVDSE GRMTNFFWAD ARSRIDYQYF  240
GDVVCFDPTY GKNRYDMPFV PIVGINHHSQ TVLFGGALLY SETEESFAWV MRTWMNAMND  300
KQPNVFLTDQ ESTIGGVVAH VLPNCRHRYC LWHICRNGIK HLAHEINTQK DFWKAFNDCL  360
YDYETIEEFE IGKWASVYAR DIFCDGMYTT QRSESINFYF DKYLKKGLPL YEFMKQYERA  420
VLDRREEENK ADFDTYYRRP ILRVHMEIEK EGAKLYTREI FYEFQEQVFQ GLSYRHKKID  480
ENDIKKVYNF EPATQSAKCS CLLFEFVGYL CRHVLKIFMV EDVQNIPEKY ILKRWTKDVK  540
SGSVMANESE NNLVKSGDSV TSRYCRICQE GVNIASKASP YAAVFDVVME GFARTLRDVE  600
IALKSLSLDS NLVQSENVEN DRNGETSVAH VQLNTQKPLL DPPIKKHKGR DPGRNYHGLK  660
KVGKKRRIGE KKATVERRKL LMWREDMVAT VKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010245233.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-120FAR1-related sequence 5