PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G124500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 333aa    MW: 37125 Da    PI: 8.1382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G124500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-07188210123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C++Cgk F+r  nL+ H+r H
  Aqcoe1G124500.1.p 188 HYCQICGKGFKRDANLRMHMRAH 210
                        68*******************99 PP
2zf-C2H211.50.00094275298123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ C+ k Fs  s+L++H + +
  Aqcoe1G124500.1.p 275 YVCNRCNqKQFSVLSDLRTHEKHC 298
                        9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.03E-7186224No hitNo description
Gene3DG3DSA:3.30.160.609.0E-7188222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632188215IPR007087Zinc finger, C2H2
SMARTSM003550.0028188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SMARTSM0035576237270IPR015880Zinc finger, C2H2-like
SMARTSM0035522275297IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MFSDEASCYQ SSSSQGLQVY GMETDMLSSS IEAGSAAETY PGSLLYGVAV LKDRVHQVRS  60
LANVIVSPCE GEYETVATAI TDVSTLIQDI IVTASSMLFT CQQLAPVSVP QASSTQAVHG  120
DDEVEQGFST DRGFPNWYGD NYVTNIIRNS NITNNMNAKG RDLTHEIPYN GCEIIEVDAA  180
NILAKYTHYC QICGKGFKRD ANLRMHMRAH GDEYKSTAAL CNPMKNASNS IRLQRKYSCP  240
QEGCRWNRRH AKFQPLKSMI CVKNHYKRSH CPKMYVCNRC NQKQFSVLSD LRTHEKHCGD  300
MKWQCSCGTT FSRRDKLTGH VALFIGHTPV AR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243188.11e-139PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_028052411.11e-139protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
RefseqXP_028101965.11e-139protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2G5EGQ50.0A0A2G5EGQ5_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_009_01096.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-100C2H2 family protein