PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G127500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 310aa MW: 33848.2 Da PI: 6.9566

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G127500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Aqcoe1G127500.1.p 139 YQCKTCNRCFPSFQALGGHRASH 161 9***********99999998887 PP
2	zf-C2H2	13.6	0.0002	216	238	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Aqcoe1G127500.1.p 216 HECSICGSEFSSGQALGGHMRRH 238 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.325	139	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.38E-8	139	161	No hit	No description
Pfam	PF13912	4.5E-10	139	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.08	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.38E-8	211	238	No hit	No description
Pfam	PF13912	7.6E-12	215	240	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	216	238	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.951	216	243	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDMEVVEETM GSNDHHAPAI IKGRRTKRQR PSSPFSLVSG SSSVGGGTSS GGGGGDGNGH 60 HGHHDGSSTS PINSNGFVDQ NTEEEEDMAN CLILLAQGHN NNETKKIDDE ENGGMERYTS 120 RKIVDAITTT TGKDGLYEYQ CKTCNRCFPS FQALGGHRAS HKKPKTAVVE EKKALVIYED 180 EGQLIFNNNS PPLPQQHMSN NRGIFSNNNN KSNKVHECSI CGSEFSSGQA LGGHMRRHRT 240 PTTNTTMTMN HHVTSDHQES KKSRNNVLAL DLNLPAPEED HHHRENKFSF ASKPQPLLFS 300 ASALVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267264.1	3e-97	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A2G5D0X5	0.0	A0A2G5D0X5_AQUCA; Uncharacterized protein
STRING	Aquca_030_00021.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-47	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G127500.1.p