PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G128700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 237aa    MW: 26550.6 Da    PI: 10.3872
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G128700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.79e-095931089
               FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                       +G  +++++s  + ++g+  + +  C ++g+ +++ +           ++k++r++ ++++gC  klk  +++dg w+++ +   HnH+l
  Aqcoe1G128700.2.p  5 IGIVTVIARSDVE-KSGRNQRVQIACERSGQFKPKANVkamtqsekkgEKKKHRKTGSKKCGCPFKLKGILSNDGGWRLSVVCGTHNHTL 93
                       5666666666655.66668899********9999887789999999988888889999**********99999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-6493IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGKSIGIVTV IARSDVEKSG RNQRVQIACE RSGQFKPKAN VKAMTQSEKK GEKKKHRKTG  60
SKKCGCPFKL KGILSNDGGW RLSVVCGTHN HTLDDNRIGR AYVGRLTPDE RLLVRDMSES  120
GVKPRFMLSF FKKKDATNVS TRSTIYNYRA KNRLSTLQGR SQMQQLFKSL DDNGYSEFHI  180
KNESDGVCTD IIFAHPQSVS LAKCFPEVLL MDCTYKTNCF NLPLLEIVGF TSSLRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EYA14e-78A0A2G5EYA1_AQUCA; Uncharacterized protein
STRINGAquca_003_00332.16e-79(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-07FAR1-related sequence 5