PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G129100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 832aa    MW: 96100 Da    PI: 8.4293
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G129100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.71.9e-1843129191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fY ++++e GF v k++skk  ++g+  +  f C ++gk+++++++   + ++++ ++t+C a+++v + +dg+w+vt +++eHnHel+p
  Aqcoe1G129100.1.p  43 DFYLKHGNEKGFPVNKRSSKKG-DDGKHRWVMFACARSGKSKSNSRN---AFKKHPISKTNCGARVNVVLCTDGRWRVTLVHHEHNHELSP 129
                        6***************998887.8999****************9998...9999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1543129IPR004330FAR1 DNA binding domain
PfamPF105519.4E-38230324IPR018289MULE transposase domain
PROSITE profilePS5096610.089473509IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-5484511IPR006564Zinc finger, PMZ-type
PfamPF044341.5E-4485507IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MENEAFDCDD PGDKPYIDND ELEEETNKLE EGSIFNTTDE LYDFYLKHGN EKGFPVNKRS  60
SKKGDDGKHR WVMFACARSG KSKSNSRNAF KKHPISKTNC GARVNVVLCT DGRWRVTLVH  120
HEHNHELSPG KSRFYKNNRA IAPFVKRRLE MNDLAGIRPN KNFNSFVMEA VRQLRLGDGD  180
AVAIQNYFTK MQANNSNFYY VIDLDTEARI KNVFWADARS KAAYEEFGDV ITFNTTYLTN  240
KYDMPFAPFV GINHHGQSIL LGCALISSED TKTFTWLFNT WLECMGDRPP NAIVTDQARA  300
MQNAIENVFP NTRHRWCLWH IMKKVPEKLG GYKQYELIKS AMEGAVYDSL SILEFEESWI  360
MFTEKYNLHK NDWLAGLYIE RHRWQYENAL RSKVEKECQT DFNSFNSWLP CITHYEIEKR  420
FQGIYTTAKF KEFQNELTGK IYCDVLSIKE DGGLVVYEIL EDKIGGKDRQ KTFTVNFKQS  480
DCNVKCNCRL FEFRGILCRH SIVVFIQQKV KIVPERYILH RWRKDTYFDW MQKPENEKFD  540
RMCNAFYQVA DLATGDEDTT KHIEQLRVDL HKVKKARENN EPSSVLASQV HVSSTTGDSN  600
PNVKESGIVH SPLALRRRGR APFKRMQPMV EQVVQKKKEN EKEKEKRKKR RKTKTDDHIV  660
SNLNPKKVDI ISLDGAIASV VIPSGASTDS YKAHELRVGG SVYLEKNVSM TSDGGSMEFG  720
GTQESITMKG GNFYMGNQFM TPIPYPNVFY GSGFPTPIQV YIYLMILYMY YYYKCSCVDN  780
ILQMQNFDNG MPIQNSGVLP YQSQSNTKIG ADFPEGYHLL SNAHNILFDR R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1635651KKKENEKEKEKRKKRRK
2641650KEKEKRKKRR
3645651KRKKRRK
4647651KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021813341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5ETG70.0A0A2G5ETG7_AQUCA; Uncharacterized protein
STRINGAquca_004_00129.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-87FAR1-related sequence 6