PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G146000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 406aa    MW: 45208.6 Da    PI: 6.7025
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G146000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28213273259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++WrKYGqKe+ gs fpr+YYrCt++   gC +kk+v+r +edp+++e+tY g+H+++
  Aqcoe1G146000.1.p 213 DDGFTWRKYGQKEILGSMFPRGYYRCTHKtfyGCDAKKQVQRLDEDPNTFEVTYYGNHTCH 273
                        8***************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27209273IPR003657WRKY domain
SuperFamilySSF1182906.8E-26210274IPR003657WRKY domain
SMARTSM007743.4E-39212274IPR003657WRKY domain
PfamPF031061.2E-26213273IPR003657WRKY domain
PROSITE profilePS5081122.825213275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFFPIDHKLA FSYKHLFNHL HCSPPKTMEE TLSTIIHGCN LARYLESNLP HLSNQSSTLS  60
NYCDEIIRVF KTAKDRLDKD NPLLPFDTKI ALQEPSELRL NELDAAVHEW LRSSYAQNME  120
LVHAQISEDN KKNPFTKTGS SRAKILEWNE RKTENMLDNA EGSLDFPRSE VEGSAGSGKS  180
PVAQRSRKRK DGVDKWTVRA AIPRMGNTDI PPDDGFTWRK YGQKEILGSM FPRGYYRCTH  240
KTFYGCDAKK QVQRLDEDPN TFEVTYYGNH TCHISQTAPS PSPISTAAST SIIRQQEPGL  300
ENLSPPPPPP ASTSLSLHSR LSMDMGGVHK NTDTFKELQL QMYGDFNQMG ERGNITSIGT  360
AGPSNLRDAK GGVEFPVVDL ADAMFNSGGS SNSLDSIFPS PMQDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-20213272968OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252412.12e-88PREDICTED: WRKY transcription factor 55
TrEMBLA0A2G5D1P60.0A0A2G5D1P6_AQUCA; Uncharacterized protein
STRINGAquca_030_00182.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-48WRKY DNA-binding protein 55