PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G154800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 335aa    MW: 38068.8 Da    PI: 7.768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G154800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.4e-54111401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+++yL+kkv+ + ++l +vi++vd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Aqcoe1G154800.1.p  11 VPPGFRFHPTDEELLCYYLRKKVAYEVIDL-DVIRDVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 101
                        69****************************.9***************943444443456********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Aqcoe1G154800.1.p 102 KAIHLTTSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 140
                        *************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-598164IPR003441NAC domain
PROSITE profilePS5100557.8211164IPR003441NAC domain
PfamPF023659.0E-2912140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMPGNGQIAA VPPGFRFHPT DEELLCYYLR KKVAYEVIDL DVIRDVDLNK LEPWDLKDKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLTTSK RIGMRKTLVF  120
YTGRAPHGQK TDWIMHEYRL NDDEGTSNCE VQEDGWVVCR VFKKKSHHRG FFQPELVSHE  180
ESHFSQMMVM KTGSAGLGHH FESQQHQQQQ HYGFTFDGSM HLPQLLSSDQ LNINNAPSFL  240
NTMELECSQN LLKLTSTGTG SVGGGSGLIH HQQDKFNGDW SFLDKLLASH QQAGMDQFSQ  300
SKWNPSTSQN IEAHKFPFHY LGVGGEADIL KYPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511016616167NO APICAL MERISTEM PROTEIN
1ut4_B4e-511016616167NO APICAL MERISTEM PROTEIN
1ut7_A4e-511016616167NO APICAL MERISTEM PROTEIN
1ut7_B4e-511016616167NO APICAL MERISTEM PROTEIN
3swm_A5e-511016619170NAC domain-containing protein 19
3swm_B5e-511016619170NAC domain-containing protein 19
3swm_C5e-511016619170NAC domain-containing protein 19
3swm_D5e-511016619170NAC domain-containing protein 19
3swp_A5e-511016619170NAC domain-containing protein 19
3swp_B5e-511016619170NAC domain-containing protein 19
3swp_C5e-511016619170NAC domain-containing protein 19
3swp_D5e-511016619170NAC domain-containing protein 19
4dul_A4e-511016616167NAC domain-containing protein 19
4dul_B4e-511016616167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KKKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811818.11e-150PREDICTED: protein SOMBRERO-like isoform X1
SwissprotQ9MA171e-114SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2G5D2V90.0A0A2G5D2V9_AQUCA; Uncharacterized protein
STRINGAquca_030_00252.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-92NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]