PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G159900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 337aa    MW: 38319 Da    PI: 6.3657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G159900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+lv++++ +G  +W+++++  g+ R++k+c++rw +yl
  Aqcoe1G159900.1.p 13 RGLWSPEEDEKLVKCINTHGHSCWSAVPKLAGLQRCGKSCRLRWINYL 60
                       788*******************************************97 PP
2Myb_DNA-binding51.32.7e-1666109146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Aqcoe1G159900.1.p  66 RGSFSAQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.984860IPR017930Myb domain
SuperFamilySSF466891.12E-2810107IPR009057Homeodomain-like
SMARTSM007179.4E-141262IPR001005SANT/Myb domain
PfamPF002496.5E-161360IPR001005SANT/Myb domain
CDDcd001671.30E-111660No hitNo description
PROSITE profilePS5129425.75761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2564115IPR009057Homeodomain-like
SMARTSM007178.8E-1665113IPR001005SANT/Myb domain
PfamPF002491.0E-1466109IPR001005SANT/Myb domain
CDDcd001671.62E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVKCINT HGHSCWSAVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPKTHNLMPP SQQNIKNACN VNQFYQQPPS VFSMNSQFRS DNNVTPMDIN QSFITLAPPH  180
PPNTNIYPPS LDQAMSTFNY QNQNHVWTTN AQNSEPSSDF TRQSLIPISS SSMIGSSGFD  240
FPDHENNNMW DDGGMEALVS PRQEEMKQTP VPQGLTQQEK VCEVQLEEER DGHHQDMDTS  300
FSDCSNFDLE FMESPLMPCG LMYSNMNSMD QLAWDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544702.11e-114PREDICTED: myb-related protein 330-like
RefseqXP_024462561.11e-114transcription factor MYB86
SwissprotQ9SPG33e-66MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A2G5D2B30.0A0A2G5D2B3_AQUCA; Uncharacterized protein
STRINGAquca_030_00294.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-83myb domain protein 67
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]