PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G166200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 330aa    MW: 36991.3 Da    PI: 7.2069
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.42.9e-1620121275
           trihelix   2 WtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                        Wt qe++ Li+a++ +eer  +++                              + +W++v +++++ g+ rs++qC++kw+nl ++ykk++
  Aqcoe1G166200.1.p  20 WTTQETMILINAKKMDEERRMKRAsgpavdsegrssasaaagsgsgsggarfPTELRWKWVEDYCWSNGCLRSQNQCNDKWDNLMRDYKKVR 111
                        *************977777665444778888899999999***********999************************************** PP

           trihelix  66 egekkrtses 75 
                        e e++ +++ 
  Aqcoe1G166200.1.p 112 EYESRLAERG 121
                        **99876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.28412104IPR017877Myb-like domain
PfamPF138378.4E-1119115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMMADQNNST THREYRKGNW TTQETMILIN AKKMDEERRM KRASGPAVDS EGRSSASAAA  60
GSGSGSGGAR FPTELRWKWV EDYCWSNGCL RSQNQCNDKW DNLMRDYKKV REYESRLAER  120
GDGDIGSYWK LERHERKDRN LPTNVLPQIY EALVEVVERK GMQKLSSSGG SACIMSSCVL  180
ERPITVLPPL LQHHSSDPTP PPLALPPPPH FHSFPTLDSD TSEYPESPAK RRKTGDQDMD  240
MDIPSTSNDQ VGSAISRSAS IITEALQSCE RQDERRHKEY ISLQERRLRI EESKTETDKE  300
AIGGLVHSIN SLASSIFALA SEKTPKSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4562553e-34AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272295.11e-121PREDICTED: trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2G5D2N51e-164A0A2G5D2N5_AQUCA; Uncharacterized protein
STRINGAquca_030_00357.11e-164(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-66Trihelix family protein