PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G166900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 390aa    MW: 43448.6 Da    PI: 5.1939
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.12e-1595147355
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                         lLl+cAeav+ ++l++a++lL ++se++sp g++++R+aayf eAL++r+  
  Aqcoe1G166900.1.p  95 GLLLQCAEAVAMDNLNKATNLLPEISEISSPFGSSIERVAAYFIEALRSRIIT 147
                        58************************************************986 PP
2GRAS207.67.2e-64149386125374
               GRAS 125 WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216
                        ++ L++ L sR+++  s+RiTgvgs    s e le+tg+rL++fA+++g+pfef +l  k  + ++l++L+ +++Ea++V++++  h l+d 
  Aqcoe1G166900.1.p 149 FLGLFHILHSRSKKIQSIRITGVGS----SFELLEATGRRLTDFASSFGLPFEFIPLEGKIGNIIDLSQLAPRQNEATVVHWMH--HCLYDI 234
                        678**********************....9**************************999999999*****************99..777777 PP

               GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                        ++s       +Lkl+k l+Pk++++veq+++ n+++Fl rf+eal+yysalfd+l  +   +s er  vE++++g ei+n+va  g +r+ +
  Aqcoe1G166900.1.p 235 TGSDLG----TLKLLKVLKPKLITIVEQDLS-NGGNFLGRFVEALHYYSALFDALGDGQEWDSMERYQVEQQIFGCEIKNIVAVGGPKRTGE 321
                        777777....*******************97.699********************888899***************************9988 PP

               GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         + + +W + l++ GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Aqcoe1G166900.1.p 322 VK-VDRWGDELRQIGFNPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 386
                        87.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2851366IPR005202Transcription factor GRAS
PfamPF035146.9E-1395147IPR005202Transcription factor GRAS
PfamPF035142.5E-61149386IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MIQSLLPRSP ITMKKTKRLN RDESQQVQEQ ELIVVEDYQR SKKRTSFEPE TVLVDEVEVE  60
NQVEEIETIV SSSSSSSRRN EFSHPCESNG LRLLGLLLQC AEAVAMDNLN KATNLLPEIS  120
EISSPFGSSI ERVAAYFIEA LRSRIITSFL GLFHILHSRS KKIQSIRITG VGSSFELLEA  180
TGRRLTDFAS SFGLPFEFIP LEGKIGNIID LSQLAPRQNE ATVVHWMHHC LYDITGSDLG  240
TLKLLKVLKP KLITIVEQDL SNGGNFLGRF VEALHYYSAL FDALGDGQEW DSMERYQVEQ  300
QIFGCEIKNI VAVGGPKRTG EVKVDRWGDE LRQIGFNPVS LGGNPAAQAS LLLGMFPWKG  360
YTLVEENGCL KLGWKDLSLL TASAWQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1009938725380Protein SCARECROW
5b3h_A1e-1009938724379Protein SCARECROW
5b3h_D1e-1009938724379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442976.11e-160scarecrow-like protein 23 isoform X2
SwissprotQ9FHZ11e-109SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2G5D2M80.0A0A2G5D2M8_AQUCA; Uncharacterized protein
STRINGAquca_030_00364.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-103GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]