PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G171100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 172aa    MW: 19982.9 Da    PI: 8.6508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G171100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-1166164190
                        EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                        ++k l++sdv    +rl+l+ k + +          + + +++++++++d  g++++++++ ++++ ++vl +GW+eF k +gL e   +++
  Aqcoe1G171100.1.p  66 WEKNLKKSDVDGGqRRLMLSSKDF-AVpsvnqllrdKDDVTKGVEVRVYDNYGEKYKMEYKRWGTK-AHVLHRGWNEFRKNHGLVEHKAITL 155
                        678888888876646777776665.233588899986666899*****************877776.79*****************999998 PP

                        EE-SS.SEE CS
                 B3  83 kldgr.sef 90 
                           +r  ++
  Aqcoe1G171100.1.p 156 WAFRRkGDQ 164
                        755554555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1363161IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1365167IPR015300DNA-binding pseudobarrel domain
CDDcd100175.28E-1168171No hitNo description
PfamPF023623.7E-869169IPR003340B3 DNA binding domain
PROSITE profilePS508639.474109171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVVEEEELAL DEILRQGAEN LKYMSEKPVN METEAFASLQ EQIETQPLIP PVERLRKKVI  60
GPCYSWEKNL KKSDVDGGQR RLMLSSKDFA VPSVNQLLRD KDDVTKGVEV RVYDNYGEKY  120
KMEYKRWGTK AHVLHRGWNE FRKNHGLVEH KAITLWAFRR KGDQSLCFAI I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5D2X51e-124A0A2G5D2X5_AQUCA; Uncharacterized protein
STRINGAquca_030_00402.11e-125(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-16B3 family protein