PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G171200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 176aa MW: 20364.5 Da PI: 9.7487

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G171200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.4	2.2e-12	73	159	2	83
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 +k+lt+sdv + grl+l +kfa+e + ++++++++ ++d++g++ + ++++k+ yv+ +GWk+F n+L++ D +++ Aqcoe1G171200.1.p 73 KKALTKSDVRGTqGRLMLTNKFAKEKinillreEDNPKKGIKVPVYDQKGNKTVMVYKHWKS---YVIINGWKQFYTNNNLQQDDEITLW 159 5889999997655*********99***88999**********9999955555...8999**************88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-18	69	164	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-15	71	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.42E-12	71	159	No hit	No description
Pfam	PF02362	3.7E-9	74	162	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAVVVEEENG NDHPDNQVSL ADEGAENLRY LNRKRLDVES AAALQALIIF QPLIVPPIVR 60 LRDQVLGPCS YIKKALTKSD VRGTQGRLML TNKFAKEKIN ILLREEDNPK KGIKVPVYDQ 120 KGNKTVMVYK HWKSYVIING WKQFYTNNNL QQDDEITLWV FRRARDWKLC FAFTW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	7e-19	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G171200.1.p