PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G177900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 312aa    MW: 35783.4 Da    PI: 8.6553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G177900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-49221491128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        l pGfrFhPtdeelv +yL++kve+k++++ e ik++diyk++PwdLp   + ++ke+yfF+ r++ky+++ r+nr+t sg+Wkatg d+++
  Aqcoe1G177900.2.p  22 LLPGFRFHPTDEELVGFYLRRKVEKKPFSI-ELIKQIDIYKYDPWDLPI-STVGDKEMYFFCIRERKYRNSIRPNRVTGSGFWKATGIDRPI 111
                        579***************************.89***************3.345899************************************ PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s    +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Aqcoe1G177900.2.p 112 YSVgdANDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149
                        **9555556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5218179IPR003441NAC domain
PROSITE profilePS5100552.88722180IPR003441NAC domain
PfamPF023652.0E-2424149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVEKIMNSS ADIVMNKDDD VLLPGFRFHP TDEELVGFYL RRKVEKKPFS IELIKQIDIY  60
KYDPWDLPIS TVGDKEMYFF CIRERKYRNS IRPNRVTGSG FWKATGIDRP IYSVGDANDC  120
IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP TTGKSTNLPS PKNNTDQEAE IWTLCRIFKR  180
TVTYKKYAPP VWRESPAAMK QQQNSSDSNS QTCSSLESVN RDYKSFGGPF VQQKESRSLF  240
NNNIINERVH MFPNQLGSIT PAIPFPHQMH SNNSINFNGS DHHHYRDGNW DELGTIVDFA  300
SDPASFLFGC K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-482218617171NO APICAL MERISTEM PROTEIN
1ut4_B6e-482218617171NO APICAL MERISTEM PROTEIN
1ut7_A6e-482218617171NO APICAL MERISTEM PROTEIN
1ut7_B6e-482218617171NO APICAL MERISTEM PROTEIN
4dul_A6e-482218617171NAC domain-containing protein 19
4dul_B6e-482218617171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272267.11e-129PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK556e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2G5D8L20.0A0A2G5D8L2_AQUCA; Uncharacterized protein
STRINGAquca_026_00367.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]